Geometric Dictionary Learning of Dynamical Systems with Optimal Transport
May 26, 2026·
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Thibaut Germain
Sami Chemlal
Rémi Flamary
Vladimir R. Kostic
Karim Lounici
Abstract
Learning dynamical systems through operator-theoretic representations provides a powerful framework for analyzing complex dynamics, as spectral quantities such as eigenvalues and invariant structures encode characteristic time scales and long-term behavior. However, dynamical operators are typically estimated independently for each system, preventing the discovery of shared structure across related dynam- ics. To address this limitation, we posit that related dynamical systems lie near a low-dimensional manifold in spectral operator space. Based on this hypothesis, we introduce DOODL (Dynamical OperatOr Dictionary Learning), a framework that learns a dictionary of characteristic spectral dynamics whose combinations ap- proximate this manifold and yield compact, interpretable embeddings of individual systems. Beyond representation learning, DOODL enables fast and interpretable operator estimation from short and partially observed trajectories by constrain- ing the estimation to the learned operator manifold. Experiments on metastable Langevin dynamics and turbulent plasma simulations demonstrate that DOODL scales to highly complex multiscale regimes while capturing characteristic spectral structure governing the dynamics rather than merely fitting trajectories, achieving errors one to two orders of magnitude lower than independent operator estimation methods in challenging low-data regimes.
Type
Publication
ArXiv preprint
Status
Open access
Funding
European Union’s Horizon Europe research and innovation (101120237 (ELIAS))
Fondation de l’Ecole Polytechnique
Hi! PARIS
French National Research Agency (ANR-23-IACL-0005 and ANR-25-PEIA-0005)
NextGenerationEU
MUR PNRR project PE0000013 CUP J53C22003010006 “Future Artificial Intelligence Research (FAIR)”
License
CC-BY-4.0

Authors
Thibaut Germain
(he/him)
Postdoctoral Researcher
My research combines machine learning and signal processing with geometric methods to study time series and dynamical systems.
Since March 2025, I have been a postdoctoral researcher at CMAP - Ecole Polytechnique, working with Karim Lounici and Rémi Flamary. My work combines operator learning and optimal transport to compare dynamical systems, uncover shared dynamical structure, and transfer knowledge across systems.
Previously, I completed my PhD at Centre Borelli, under the supervision of Charles Truong and Laurent Oudre. I developed methods tailored for the discovery and statistical analysis of time series patterns with a particular focus on biomedical applications.